Web3 dec. 2024 · Searching for 1,440 embryophyte single-copy orthologs 55, we found 53% complete, ... These gene family trees were entered into the Multi-tAxon … WebMAPS: Multi-tAxon Paleopolyploidy Search Algorithm Creator: The Barker lab Description: MAPS infers ancient whole genome duplication (WGD) or paleopolyploidization events by counting and summarizing subtrees from thousands of gene trees. Inputs to MAPS are a ladderized species tree and gene family phylogenies.
Phylogenetic placement of WGDs in seed plant and gymnosperm …
Web5 nov. 2024 · Phylotranscriptomic Analyses Reveal Asymmetrical Gene Duplication Dynamics and Signatures of Ancient Polyploidy in Mints Genome Biology and Evolution Oxford Academic Abstract. Ancient duplication events and retained gene duplicates have contributed to the evolution of many novel plant traits and, consequently, to the diversi Web10 iun. 2024 · The percentage of subtrees by MAPS analysis, which contained a gene duplication (red line) shared by descendant species for each node, is shown on the right. ... To corroborate the inferences and phylogenetic placements of these ancient WGD, we also used the Multi-tAxon Paleopolyploidy Search (MAPS) tool (Li et al., 2015, 2024; ... twitch channel points not working
A chromosome-level genome assembly provides insights into …
Web31 mar. 2024 · Multi-species gene tree analyses with MAPS supported the ortholog divergence results and found no evidence that the inferred mesopolyploidies in Anastatica, Heliophila, Iberis, Lobularia, Physaria and Streptanthus were shared with other taxa. Web2 iul. 2024 · Our Multi-tAxon Paleopolyploidy Search (MAPS) 20 phylogenomic analyses of the Azolla and Salvinia genomes (Fig. (Fig.3a), 3a), together with all available transcriptome data from other ferns, support two whole-genome duplication (WGD) events: a recent WGD event occurring in Azolla following its divergence from Salvinia and an … Web23 oct. 2024 · MAPS analyses of WGDs from transcriptomes of multiple species To infer and locate putative WGDs in our datasets, we used a gene-tree sorting and counting … twitch channel points icon size